STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_964endonuclease/Exonuclease/phosphatase family protein; [R] COG3568 Metal-dependent hydrolase. (256 aa)    
Predicted Functional Partners:
AQM60578.1
Beta-eliminating lyase family protein; [E] COG0520 Selenocysteine lyase.
    
   0.728
AQM60230.1
Hypothetical protein.
 
    0.657
NPD11_965
RNase H superfamily protein.
       0.586
AQM60478.1
Hypothetical protein; Glycosyl hydrolase family 65, N-terminal domain protein.
  
   
 0.572
plc
Phospholipase C.
   
  
 0.568
NPD11_966
HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, IB family protein; [E] COG0560 Phosphoserine phosphatase.
       0.554
AQM60214.1
Glycosyl hydrolase family 20, catalytic domain protein; [G] COG3525 N-acetyl-beta-hexosaminidase.
  
     0.453
NPD11_525
Glycosyl Hydrolase Family 88 family protein.
  
     0.429
ptsG
PTS system glucose-specific EIICBA component; [G] COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific.
  
  
 0.428
NPD11_619
PTS-II-ABC-beta: PTS system, beta-glucoside-specific IIABC component family protein; [G] COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific.
  
  
 0.428
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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