STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_989D-alanyl-D-alanine carboxypeptidase family protein; [V] COG2367 Beta-lactamase class A. (259 aa)    
Predicted Functional Partners:
pfkA1
Phosphofructokinase family protein; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family. Mixed-substrate PFK group III subfamily.
       0.627
AQM60657.1
Beta-lactamase enzyme family protein; [V] COG2367 Beta-lactamase class A.
  
     0.624
AQM60124.1
Hypothetical protein.
  
     0.598
AQM60070.1
Tetratricopeptide repeat family protein; [K] COG1396 Predicted transcriptional regulators.
  
     0.568
AQM61368.1
Ribosomal RNA adenine dimethylase family protein.
  
     0.543
AQM59511.1
[R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
     0.539
AQM61013.1
Hypothetical protein.
  
     0.488
AQM58923.1
ATP synthase B/B' CF family protein.
  
     0.471
AQM60840.1
Conserved hypothetical protein; [S] COG3906 Uncharacterized protein conserved in bacteria.
  
     0.460
uppP
Undecaprenyl-diphosphatase UppP; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
     
 0.445
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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