STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_99Tetratricopeptide repeat family protein; [R] COG0457 FOG: TPR repeat. (116 aa)    
Predicted Functional Partners:
NPD11_977
3'-5' exonuclease family protein; [L] COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases.
 
     0.780
NPD11_146
Tetratricopeptide repeat family protein; [R] COG0457 FOG: TPR repeat.
 
 
 0.777
AQM59053.1
Hypothetical protein.
 
  
 0.753
NPD11_367
spoIIIAH-like family protein.
  
     0.747
AQM60048.1
Conserved hypothetical protein; [J] COG2868 Predicted ribosomal protein.
  
     0.746
secE
Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.730
AQM60070.1
Tetratricopeptide repeat family protein; [K] COG1396 Predicted transcriptional regulators.
  
 
   0.713
AQM60319.1
spore_CotS: spore coat, CotS family protein.
  
     0.706
AQM59686.1
Glucose / Sorbosone dehydrogenase family protein.
  
    0.704
AQM58775.1
Helix-turn-helix family protein; [R] COG0457 FOG: TPR repeat.
 
 
 
 0.701
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.