STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_993TPR repeat family protein. (575 aa)    
Predicted Functional Partners:
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
  
 0.950
manA
manA: mannose-6-phosphate isomerase, class I; [G] COG1482 Phosphomannose isomerase.
       0.770
AQM59676.1
GGDEF: diguanylate cyclase domain protein; [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
   
 
 0.759
AQM60884.1
Rhomboid family protein; [R] COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid).
   
 
 0.718
AQM59238.1
[R] COG0457 FOG: TPR repeat.
     
 0.697
uppP
Undecaprenyl-diphosphatase UppP; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
     
 0.635
AQM60237.1
[M] COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.
     
 0.631
AQM60506.1
[M] COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.
     
 0.631
AQM61199.1
Type IV leader peptidase family protein; [NOU] COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases.
     
 0.630
NPD11_712
Type IV leader peptidase family protein; [NOU] COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases.
     
 0.630
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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