STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_997D-Ala-D-Ala carboxypeptidase 3 family protein; [M] COG1686 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. (382 aa)    
Predicted Functional Partners:
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
   
    0.670
spoIIP
spore_II_P: stage II sporulation P family protein.
  
  
 0.486
ftsW
ftsW: cell division protein FtsW; [D] COG0772 Bacterial cell division membrane protein; Belongs to the SEDS family.
 
  
 0.476
spmA
Nucleoside recognition family protein; [R] COG2715 Uncharacterized membrane protein, required for spore maturation in B.subtilis.
  
  
 0.457
NPD11_154
spoVD_pbp: stage V sporulation protein D; [M] COG0768 Cell division protein FtsI/penicillin-binding protein 2.
 
  
 0.425
spmB
[S] COG0700 Uncharacterized membrane protein.
  
  
 0.420
hisS
hisS: histidine--tRNA ligase; [J] COG0124 Histidyl-tRNA synthetase.
  
    0.419
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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