STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1I7TU87Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (461 aa)    
Predicted Functional Partners:
A0A1I7U611
Uncharacterized protein.
   
 0.968
A0A1I7UM48
Uncharacterized protein.
   
 0.968
A0A1I7T9H7
HDAC_interact domain-containing protein.
   
 0.960
A0A1I7UL74
Uncharacterized protein.
    
 0.950
A0A1I7U480
WD_REPEATS_REGION domain-containing protein.
   
 0.942
A0A1I7UJX6
Uncharacterized protein.
   
 0.926
A0A1I7UBA2
Uncharacterized protein.
    
 0.921
A0A1I7U479
WD_REPEATS_REGION domain-containing protein.
   
 0.915
A0A1I7V421
Uncharacterized protein.
    
 0.912
A0A1I7TJL1
Uncharacterized protein.
   
 0.910
Your Current Organism:
Caenorhabditis tropicalis
NCBI taxonomy Id: 1561998
Other names: C. tropicalis, Caenorhabditis sp. 11 JU1373, Caenorhabditis sp. 11 JU258, Caenorhabditis sp. 11 KK-2011, Caenorhabditis sp. 11 MAF-2010, Caenorhabditis sp. WashU-11, Caenorhabditis tropicalis Felix, Braendle & Cutter, 2014
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.