STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSS41704.1Type 4 pilus biogenesis protein PilQ. (718 aa)    
Predicted Functional Partners:
OSS41707.1
Type 4 pilus biogenesis protein PilN.
  
 
 0.988
OSS41708.1
Type 4 pilus biogenesis protein PilM.
 
 
 0.988
OSS41706.1
Type 4 pilus biogenesis protein PilO.
 
 
 0.970
smpB
tmRNA-binding protein SmpB; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switc [...]
       0.803
OSS41705.1
Hypothetical protein.
       0.773
OSS41902.1
Type 4 fimbrial assembly protein PilC.
 
 
 
 0.762
OSS41447.1
Biopolymer transport protein ExbD/TolR.
  
     0.689
OSS42423.1
Biopolymer transport protein ExbD/TolR.
  
     0.654
OSS41448.1
MotA/TolQ/ExbB proton channel family protein.
  
     0.652
OSS42118.1
Type 4 fimbrial assembly protein PilC.
 
 
 
 0.644
Your Current Organism:
Desulfurella amilsii
NCBI taxonomy Id: 1562698
Other names: D. amilsii, DSM 29984, Desulfurella amilsii Florentino et al. 2016, Desulfurella sp. TR1, JCM 30680, strain TR1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.