STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSS41863.1Uroporphyrinogen 3 decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. (323 aa)    
Predicted Functional Partners:
OSS41865.1
Protoporphyrinogen 9 oxidase, aerobic, HemY; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
 
 
 0.997
OSS41864.1
Ferrochelatase, protoheme ferro-lyase; Belongs to the ferrochelatase family.
 
  
 0.994
OSS42361.1
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.
 0.985
OSS41883.1
Uroporphyrinogen-III methyltransferase / Uroporphyrinogen-III synthase; Belongs to the precorrin methyltransferase family.
  
 
 0.905
OSS42362.1
Hypothetical protein.
  
 
 0.905
OSS41862.1
DNA polymerase I.
     
 0.897
OSS41777.1
Hypothetical protein.
  
 
 0.764
OSS41778.1
Protoporphyrinogen oxidase.
  
 
 0.764
OSS41779.1
Hypothetical protein; Similar to Gll1135.
  
 
 0.764
OSS41566.1
Putative radical SAM family enzyme in heat shock cluster, similarity with CPO of BS HemN-type; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
 
 0.757
Your Current Organism:
Desulfurella amilsii
NCBI taxonomy Id: 1562698
Other names: D. amilsii, DSM 29984, Desulfurella amilsii Florentino et al. 2016, Desulfurella sp. TR1, JCM 30680, strain TR1
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