STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSS42180.1Putative glycolate dehydrogenase, 2-subunit type iron-sulfur subunit GlcF. (417 aa)    
Predicted Functional Partners:
OSS42181.1
Glycolate dehydrogenase subunit GlcD.
 
 0.979
OSS41714.1
Putative L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF.
 
0.969
OSS42603.1
Putative L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE.
 
0.969
OSS42421.1
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.941
OSS42604.1
Putative L-lactate dehydrogenase, hypothetical protein subunit YkgG.
 
 
 0.907
OSS41977.1
Glycolate dehydrogenase subunit GlcD.
 
 0.890
OSS41976.1
Putative oxidoreductase ferredoxin-type protein, clusters with CPO.
  
  
 
0.810
OSS41959.1
NADP-dependent malic enzyme.
  
 
 0.809
OSS41879.1
Pyridine nucleotide-disulfide oxidoreductase family protein.
    
 0.792
icmF
B12 binding domain / kinase domain / Methylmalonyl-CoA mutase; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
    
  0.780
Your Current Organism:
Desulfurella amilsii
NCBI taxonomy Id: 1562698
Other names: D. amilsii, DSM 29984, Desulfurella amilsii Florentino et al. 2016, Desulfurella sp. TR1, JCM 30680, strain TR1
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