STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NY78_1224TPR repeat. (244 aa)    
Predicted Functional Partners:
NY78_1196
Heptosyltransferase family protein.
  
  
  0.847
NY78_4174
Hypothetical protein.
  
  
 0.833
NY78_0819
Hypothetical protein.
  
  
  0.831
NY78_2363
Heptosyltransferase family protein.
  
  
  0.820
NY78_0260
Heptosyltransferase family protein.
  
  
  0.814
NY78_0486
Glycosyl transferase, group 1 family protein.
  
  
  0.788
NY78_4168
Flagellar assembly protein FliH.
 
   
 0.782
NY78_2362
Hypothetical protein.
 
     0.777
NY78_2280
Hypothetical protein.
  
     0.773
NY78_2307
Hypothetical protein.
  
     0.773
Your Current Organism:
Desulfovibrio sp. TomC
NCBI taxonomy Id: 1562888
Other names: D. sp. TomC
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.