STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEA14727.1Hypothetical protein; Family membership. (170 aa)    
Predicted Functional Partners:
CEA14722.1
Hypothetical protein; Family membership.
     
 0.786
CEA14724.1
RNA polymerase sigma factor, sigma-70 family [Transcription]; Family membership; Belongs to the sigma-70 factor family. ECF subfamily.
       0.784
CEA14728.1
Hypothetical protein.
       0.605
efp2
Elongation factor P 2; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
  
 0.605
CEA14720.1
Exported serine protease, subtilase family; Peptidase S8 family domain, uncharacterized subfamily 9; This family is a member of the Peptidases S8 or Subtilases serine endo-and exo-peptidase clan. They have an Asp/His/Ser catalytic triad; High confidence in function and specificity.
   
   0.571
pepD1
Cytosol non-specific dipeptidase; Di-and tripeptidases [Amino acid transport and metabolism]; High confidence in function and specificity.
       0.563
CEA14717.1
Flavodoxin domain; This is a family of flavodoxins. Flavodoxins are electron transfer proteins that carry a molecule of non-covalently bound FMN; Conserved hypothetical protein.
       0.563
CEA14719.1
Putative membrane protein.
       0.563
CEA14712.1
Putative membrane protein.
       0.548
rsmA
Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
    0.476
Your Current Organism:
Fermentimonas caenicola
NCBI taxonomy Id: 1562970
Other names: CECT 8609, DSM 28696, F. caenicola, Fermentimonas caenicola Hahnke et al. 2016, LMG 28429, LMG:28429, Porphyromonadaceae bacterium ING2-E5B, strain E5B, strain ING2-E5B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.