STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tatDDNase; Mg-dependent DNase [DNA replication, recombination,and repair]; High confidence in function and specificity. (232 aa)    
Predicted Functional Partners:
CEA14936.1
Putative haemolytic domain; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.
      0.964
rnpA
Ribonuclease P; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
       0.780
CEA16919.1
ThiF family protein; High confidence in function and specificity.
     0.638
CEA16386.1
Hypothetical protein; High confidence in function and specificity.
  
     0.600
hemD
uroporphyrinogen-III synthase (HemD); Catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme; High confidence in function and specificity.
       0.541
CEA14929.1
Putative membrane protein; Domain of unknown function (DUF4271); This family of integral membrane proteins is functionally uncharacterized; Hypothetical protein.
       0.493
CEA14927.1
Hypothetical protein; Predicted Rossmann fold nucleotide-binding protein [General function prediction only]; High confidence in function and specificity; Belongs to the LOG family.
       0.454
secF
Hypothetical protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
  
  
 0.429
Your Current Organism:
Fermentimonas caenicola
NCBI taxonomy Id: 1562970
Other names: CECT 8609, DSM 28696, F. caenicola, Fermentimonas caenicola Hahnke et al. 2016, LMG 28429, LMG:28429, Porphyromonadaceae bacterium ING2-E5B, strain E5B, strain ING2-E5B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.