STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEA15147.1Nitroreductase family protein; High confidence in function and specificity. (187 aa)    
Predicted Functional Partners:
CEA17042.1
Hypothetical protein; High confidence in function and specificity.
 
  
 0.796
CEA15148.1
Carboxynorspermidine decarboxylase; High confidence in function and specificity.
       0.768
CEA17132.1
Hypothetical protein; High confidence in function and specificity.
  
     0.734
CEA15145.1
Hypothetical protein.
       0.520
CEA15146.1
Hypothetical protein; Di-iron-containing protein involved in the repair of iron- sulfur clusters; Belongs to the RIC family.
       0.520
CEA15149.1
Putative membrane protein.
       0.456
ribBA
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
 
 0.449
CEA16569.1
ABC transporter permease; High confidence in function and specificity.
  
  
 0.437
CEA16570.1
Hypothetical protein; High confidence in function and specificity.
  
  
 0.437
yngI
Putative acyl-CoA synthetase YngI; High confidence in function and specificity.
   
 
 0.405
Your Current Organism:
Fermentimonas caenicola
NCBI taxonomy Id: 1562970
Other names: CECT 8609, DSM 28696, F. caenicola, Fermentimonas caenicola Hahnke et al. 2016, LMG 28429, LMG:28429, Porphyromonadaceae bacterium ING2-E5B, strain E5B, strain ING2-E5B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.