STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEA15331.1NAD-dependent epimerase/dehydratase; High confidence in function and specificity. (370 aa)    
Predicted Functional Partners:
capD
UDP-glucose 4-epimerase; High confidence in function and specificity.
 
 
 0.994
CEA15332.1
UDP-N-acetylglucosamine 2-epimerase; High confidence in function and specificity; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
 
 
 0.993
udg
UDP-glucose 6-dehydrogenase; High confidence in function and specificity.
  
 
 0.950
CEA16355.1
Hypothetical protein; High confidence in function and specificity.
  
 
 0.922
CEA17107.1
Hypothetical protein; High confidence in function and specificity.
  
 
 0.922
CEA15329.1
Glycosyl transferase group 1; High confidence in function and specificity.
 
  
 0.900
CEA15621.1
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
  
 
 0.871
rfbB
dTDP-glucose 4,6-dehydratase; This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]; High confidence in function and specificity; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.816
CEA15276.1
Group 1 glycosyl transferase; High confidence in function and specificity.
 
  
 0.795
rmlA1
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.793
Your Current Organism:
Fermentimonas caenicola
NCBI taxonomy Id: 1562970
Other names: CECT 8609, DSM 28696, F. caenicola, Fermentimonas caenicola Hahnke et al. 2016, LMG 28429, LMG:28429, Porphyromonadaceae bacterium ING2-E5B, strain E5B, strain ING2-E5B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.