STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEA16253.1Hypothetical protein; High confidence in function and specificity. (486 aa)    
Predicted Functional Partners:
CEA16255.1
Phage/plasmid primase, P4 family; High confidence in function and specificity.
 
   
 0.897
CEA16994.1
Phage/plasmid primase, P4 family; High confidence in function and specificity.
 
   
 0.772
CEA15300.1
Phage/plasmid primase, P4 family; High confidence in function and specificity.
 
   
 0.764
CEA16528.1
Hypothetical protein; High confidence in function and specificity.
 
   
 0.708
CEA15923.1
Hypothetical protein; Family membership.
 
 
 
 0.561
dnaB
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
  
 
 0.559
CEA16270.1
Integrase; High confidence in function and specificity; Belongs to the 'phage' integrase family.
 
  
 0.508
CEA16993.1
Hypothetical protein; Family membership.
 
   
 0.506
sbcD
DNA repair exonuclease; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
 
  
 0.499
CEA16252.1
Hypothetical protein.
       0.460
Your Current Organism:
Fermentimonas caenicola
NCBI taxonomy Id: 1562970
Other names: CECT 8609, DSM 28696, F. caenicola, Fermentimonas caenicola Hahnke et al. 2016, LMG 28429, LMG:28429, Porphyromonadaceae bacterium ING2-E5B, strain E5B, strain ING2-E5B
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.