STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEA16933.1Hypothetical protein; High confidence in function and specificity. (446 aa)    
Predicted Functional Partners:
ycf16
Putative ATP-dependent transporter ycf16; High confidence in function and specificity.
 
 0.998
CEA16932.1
Putative cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 0.996
CEA16845.1
Hypothetical protein.
   
 0.819
CEA15783.1
UPF0051 protein; High confidence in function and specificity.
   
0.802
CEA16931.1
RNA polymerase sigma-70 factor; High confidence in function and specificity; Belongs to the sigma-70 factor family. ECF subfamily.
       0.762
CEA16935.1
ABC transporter ATP-binding protein; High confidence in function and specificity.
     
 0.643
CEA16936.1
Hypothetical protein; High confidence in function and specificity.
     
 0.631
CEA15533.1
Hypothetical protein; High confidence in function and specificity.
 
 
 0.582
CEA16930.1
Hypothetical protein; High confidence in function and specificity.
       0.541
CEA16937.1
Hypothetical protein; High confidence in function and specificity.
       0.541
Your Current Organism:
Fermentimonas caenicola
NCBI taxonomy Id: 1562970
Other names: CECT 8609, DSM 28696, F. caenicola, Fermentimonas caenicola Hahnke et al. 2016, LMG 28429, LMG:28429, Porphyromonadaceae bacterium ING2-E5B, strain E5B, strain ING2-E5B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.