STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG6Telomerase-binding protein EST1A isoform X1. (1387 aa)    
Predicted Functional Partners:
UPF1
Regulator of nonsense transcripts 1.
   
 0.986
SMG5
Protein SMG5 isoform X1.
   
0.969
TERT
Telomerase reverse transcriptase.
   
 0.968
UPF2
Regulator of nonsense transcripts 2.
   
 0.950
RBM8A
RNA-binding protein 8A.
    
 0.949
SMG7
Protein SMG7 isoform X1.
    
0.942
EIF4A3
Eukaryotic initiation factor 4A-III.
    
 0.932
MAGOH
Protein mago nashi homolog.
    
 0.917
CASC3
Protein CASC3.
   
 
 0.913
NOP10
H/ACA ribonucleoprotein complex subunit 3.
     
 0.881
Your Current Organism:
Cyanistes caeruleus
NCBI taxonomy Id: 156563
Other names: Blaumeise, C. caeruleus, Parus caeruleus, blue tit
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.