STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATXN2Ataxin-2 isoform X1. (1111 aa)    
Predicted Functional Partners:
LSM12
Protein LSM12 homolog.
    
 
 0.993
DDX6
Probable ATP-dependent RNA helicase DDX6.
    
 
 0.944
SPACA6
Sperm acrosome membrane-associated protein 6 isoform X1.
    
 
 0.932
TRNAU1AP
TRNA selenocysteine 1-associated protein 1 isoform X1.
    
 
 0.883
PABPC1L
poly(A) binding protein cytoplasmic 1 like.
   
 
 0.778
PABPC1
Polyadenylate-binding protein 1.
   
 
 0.778
PABPC4
Polyadenylate-binding protein 4.
   
 
 0.778
NCL
Nucleolin.
   
 
 0.738
DNAJC6
Putative tyrosine-protein phosphatase auxilin isoform X1.
  
  
 0.736
IMPACT
Protein IMPACT isoform X1.
    
 
 0.723
Your Current Organism:
Cyanistes caeruleus
NCBI taxonomy Id: 156563
Other names: Blaumeise, C. caeruleus, Parus caeruleus, blue tit
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.