STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HTATSF1HIV Tat-specific factor 1. (454 aa)    
Predicted Functional Partners:
SF3A2
Splicing factor 3a subunit 2.
   
 0.986
SNRPA1
U2 small nuclear ribonucleoprotein A' isoform X1.
    
 0.982
SF3B3
Splicing factor 3B subunit 3.
    
 0.977
SF3A1
Splicing factor 3A subunit 1.
    
 0.973
LOC111944367
Splicing factor 3B subunit 4.
    
 0.972
SNRPF
Small nuclear ribonucleoprotein F.
   
  0.966
PHF5A
PHD finger protein 5A.
    
 0.959
SF3A3
Splicing factor 3A subunit 3.
    
 0.957
SF3B6
Pre-mRNA branch site protein p14.
    
 0.956
SF3B1
Splicing factor 3b subunit 1.
    
 0.956
Your Current Organism:
Cyanistes caeruleus
NCBI taxonomy Id: 156563
Other names: Blaumeise, C. caeruleus, Parus caeruleus, blue tit
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.