STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C9orf78Telomere length and silencing protein 1 homolog. (214 aa)    
Predicted Functional Partners:
SLU7
SLU7 homolog, splicing factor.
   
 
 0.945
PRPF8
Pre-mRNA-processing-splicing factor 8.
    
 
 0.845
NKAPL
NFKB activating protein like.
   
 
  0.759
MED22
Mediator of RNA polymerase II transcription subunit 22 isoform X1.
   
  
 0.753
SYF2
Pre-mRNA-splicing factor SYF2.
   
 
 0.730
ENSCCEP00000001633
annotation not available
    
 
 0.729
SNRNP200
U5 small nuclear ribonucleoprotein 200 kDa helicase-like.
    
 
 0.729
CWC22
Pre-mRNA-splicing factor CWC22 homolog.
    
 0.711
PPIL1
Peptidyl-prolyl cis-trans isomerase-like 1 isoform X1.
    
  0.707
DHX35
Probable ATP-dependent RNA helicase DHX35 isoform X1.
   
 0.687
Your Current Organism:
Cyanistes caeruleus
NCBI taxonomy Id: 156563
Other names: Blaumeise, C. caeruleus, Parus caeruleus, blue tit
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.