STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEJ14044.1Methyltransferase domain-containing protein. (222 aa)    
Predicted Functional Partners:
SEJ14017.1
Lipopolysaccharide kinase (Kdo/WaaP) family protein.
 
    0.950
SEI74897.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
    
 0.886
SEI46507.1
Lipopolysaccharide kinase (Kdo/WaaP) family protein.
 
  
 0.850
SEJ13992.1
Hypothetical protein.
     
 0.831
SEJ63371.1
Uncharacterized protein YjiK.
  
   
 0.767
gcvP
Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
     
 0.759
SEJ18045.1
poly(beta-D-mannuronate) C5 epimerase.
  
     0.754
SEJ17985.1
Alginate biosynthesis protein AlgK.
  
     0.744
cysN
Adenylylsulfate kinase /sulfate adenylyltransferase subunit 1; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
  
 
 0.741
SEJ63341.1
Uncharacterized protein YjiK.
  
   
 0.740
Your Current Organism:
Pseudomonas sp. NFR16
NCBI taxonomy Id: 1566248
Other names: P. sp. NFR16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.