STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP21777.1N-acetylmuramoyl-L-alanine amidase. (512 aa)    
Predicted Functional Partners:
SFQ36151.1
Rhomboid family protein.
  
  0.966
lolA
Outer membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
    
   0.939
rlpA
Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
  
 0.923
SFP21793.1
tRNA threonylcarbamoyladenosine biosynthesis protein TsaE; Manually curated.
  
 
 0.910
SFP34945.1
Muramoyltetrapeptide carboxypeptidase.
    
 0.882
SFP84890.1
Cell division protein FtsN.
 
 0.879
nagZ
beta-N-acetylhexosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.
    
 0.870
rlpA-2
Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
    
 0.792
SFP22900.1
Lipoprotein NlpD.
 
  
 0.766
SFP31201.1
Peptidase family M23.
 
  
 0.758
Your Current Organism:
Variovorax sp. 770b2
NCBI taxonomy Id: 1566271
Other names: V. sp. 770b2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.