STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP78649.1Protein of unknown function. (72 aa)    
Predicted Functional Partners:
SFP78677.1
Tat (twin-arginine translocation) pathway signal sequence.
 
     0.916
SFP78633.1
Protein of unknown function.
 
     0.913
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
 
     0.894
SFP78620.1
Membrane protease subunit, stomatin/prohibitin family, contains C-terminal Zn-ribbon domain.
 
     0.818
SFP78854.1
S-adenosylmethionine decarboxylase; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine.
 
     0.576
SFP79885.1
Type IV pilus assembly protein PilW.
  
     0.555
SFP78692.1
Saccharopine dehydrogenase NADP binding domain-containing protein.
       0.485
SFP78706.1
DoxX-like family protein.
       0.485
SFP78719.1
Uncharacterized membrane protein.
       0.485
SFQ39598.1
Hypothetical protein.
  
     0.433
Your Current Organism:
Variovorax sp. 770b2
NCBI taxonomy Id: 1566271
Other names: V. sp. 770b2
Server load: low (24%) [HD]