STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE07382.1Outer membrane protein OmpA. (198 aa)    
Predicted Functional Partners:
SFC84118.1
Outer membrane protein beta-barrel domain-containing protein.
   
 0.822
SFB92149.1
Lipid A 3-O-deacylase (PagL).
   
 0.792
SFD89482.1
Polysaccharide export outer membrane protein.
   
 0.755
SFC91979.1
Hemolysin activation/secretion protein.
  
  
 0.750
SFC16200.1
Type VI secretion system protein ImpK.
 
 0.734
SFD95481.1
Type VI secretion system protein ImpK.
 
 0.732
SFC80397.1
Maltoporin.
     
 0.722
SFD07991.1
Vitamin B12 transporter.
     
 0.722
SFB70411.1
Outer membrane protein.
     
 0.720
SFC36994.1
Conserved repeat domain-containing protein.
    
 0.710
Your Current Organism:
Variovorax sp. NFACC26
NCBI taxonomy Id: 1566275
Other names: V. sp. NFACC26
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.