STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM28267.1Ser/Thr protein kinase RdoA involved in Cpx stress response, MazF antagonist. (332 aa)    
Predicted Functional Partners:
SFK69535.1
Homoserine dehydrogenase.
    
 0.896
SFL84068.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
  0.895
SFL38082.1
Cystathione beta-lyase.
   
 
  0.893
SFL07787.1
Threonine synthase.
    
  0.891
ahcY
Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.
    
  0.891
SFL47889.1
Homocysteine S-methyltransferase.
    
  0.891
SFL10278.1
O-acetylhomoserine (thiol)-lyase.
    
  0.806
SFL10633.1
O-acetylhomoserine (thiol)-lyase.
    
  0.806
SFL49271.1
Homoserine kinase type II.
  
  
  0.757
SFL26256.1
Threonine synthase; Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine.
    
  0.710
Your Current Organism:
Paenibacillus sp. 112
NCBI taxonomy Id: 1566278
Other names: P. sp. 1_12, Paenibacillus sp. 1_12
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