STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SET30774.1DNA-binding transcriptional regulator SgrR of sgrS sRNA, contains a MarR-type HTH domain and a solute-binding domain. (606 aa)    
Predicted Functional Partners:
SET99232.1
Peptide/nickel transport system permease protein; Manually curated.
  
  
  0.758
SET99210.1
Peptide/nickel transport system permease protein.
  
  
  0.746
SEU26387.1
Peptide/nickel transport system substrate-binding protein.
  
  
 0.742
SET30810.1
Predicted arabinose efflux permease, MFS family.
 
     0.714
SET04711.1
Peptide/nickel transport system permease protein.
  
  
  0.691
SET68502.1
Peptide/nickel transport system substrate-binding protein.
  
  
 0.689
SEU26399.1
Peptide/nickel transport system permease protein.
  
  
  0.684
SET04668.1
Peptide/nickel transport system permease protein.
  
  
  0.664
SEU26406.1
Peptide/nickel transport system permease protein.
  
  
  0.629
SET68473.1
Peptide/nickel transport system permease protein.
  
  
  0.604
Your Current Organism:
Paenibacillus sp. NFR01
NCBI taxonomy Id: 1566279
Other names: P. sp. NFR01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.