STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDA29932.1Phage shock protein C (PspC) family protein. (126 aa)    
Predicted Functional Partners:
SDA29917.1
Phage shock protein A (PspA) family protein.
 
 
 0.999
SDA29924.1
Phage shock protein B.
 
   
 0.974
SDA12900.1
Response regulator receiver domain-containing protein.
   
 
 0.963
SDA11695.1
PAS domain S-box-containing protein.
   
   0.915
SDA17576.1
PAS domain S-box-containing protein.
   
   0.915
SDA30066.1
PAS fold-containing protein.
   
   0.915
SDA31644.1
PAS domain S-box-containing protein.
   
   0.915
SDA35846.1
PAS domain S-box-containing protein.
   
   0.915
SDA35864.1
PAS domain S-box-containing protein.
   
   0.915
SDA29910.1
Psp operon transcriptional activator.
 
   
 0.826
Your Current Organism:
Sphingomonas sp. NFR15
NCBI taxonomy Id: 1566282
Other names: S. sp. NFR15
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