STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL86506.1Hypothetical protein. (348 aa)    
Predicted Functional Partners:
SFL33884.1
High affinity Mn2+ porin.
     
 0.922
SFL90622.1
Outer membrane protein (porin).
   
 
 0.873
lptD
LPS-assembly protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
     
 0.850
SFM30045.1
Vitamin B12 transporter.
     
 0.829
SFL78684.1
Iron complex outermembrane recepter protein.
     
 0.829
pal
Peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
     
 0.787
SFL35866.1
OmpA-OmpF porin, OOP family.
     
 0.787
SFL36200.1
Outer membrane protein OmpA.
     
 0.787
SFL38030.1
Outer membrane protein OmpA; Manually curated.
     
 0.787
SFL63143.1
OmpA family protein.
     
 0.787
Your Current Organism:
Bradyrhizobium sp. NFR13
NCBI taxonomy Id: 1566285
Other names: B. sp. NFR13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.