STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPGR_04009Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding. (187 aa)    
Predicted Functional Partners:
CPGR_04008
Putative permease, DMT superfamily.
 
     0.916
CPGR_04010
Type VII secretion protein EccB, Actinobacterial.
       0.632
CPGR_00010
Integral membrane protein.
  
     0.541
CPGR_04007
Cutinase.
       0.485
CPGR_00012
Transcriptional regulator with HTH domain and aminotransferase domain protein.
  
     0.459
CPGR_04006
Cutinase.
       0.439
Your Current Organism:
Mycolicibacterium komanii
NCBI taxonomy Id: 1566885
Other names: ATCC BAA-2758, CIP 110823, M. komanii, Mycobacterium komaniense, Mycobacterium komaniense Gcebe et al. 2018
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.