STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_0021Type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. (265 aa)    
Predicted Functional Partners:
Mmc1_0932
PFAM: type II secretion system protein; KEGG: bbr:BB0780 putative type II secretion system protein.
 
  
 0.923
Mmc1_0931
PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: bbr:BB0781 putative type II secretion system protein.
 
 
 0.919
coaE
dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
 
  
 0.909
Mmc1_1609
Pilus retraction ATPase PilT; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: mca:MCA1537 twitching motility protein PilT.
 
   
 0.848
Mmc1_3531
TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: neu:NE1611 bacterial general secretion pathway protein G.
 
  
 0.797
Mmc1_0600
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: ComEC/Rec2-related protein; KEGG: noc:Noc_2672 DNA internalization-related competence protein ComEC/Rec2.
 
  
 0.792
Mmc1_3661
TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: mag:amb0681 predicted Rossmann fold nucleotide-binding protein.
  
  
 0.734
aroE
Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
  
  
 0.727
Mmc1_0928
TIGRFAM: pilus (MSHA type) biogenesis protein MshL; PFAM: type II and III secretion system protein; KEGG: bbr:BB0784 putative type II secretion system protein; Belongs to the bacterial secretin family.
 
   
 0.624
Mmc1_1109
PFAM: type II and III secretion system protein; KEGG: psp:PSPPH_3054 general secretion pathway protein GspD; Belongs to the bacterial secretin family.
 
   
 0.584
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.