STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_0113KEGG: cte:CT0910 hypothetical protein. (234 aa)    
Predicted Functional Partners:
Mmc1_0112
KEGG: xcb:XC_3587 hypothetical protein.
 
     0.949
Mmc1_3220
PFAM: SMC domain protein; KEGG: ana:alr0507 unknown protein.
 
     0.783
Mmc1_3221
Conserved hypothetical protein; KEGG: ana:alr0508 unknown protein.
  
     0.757
Mmc1_1577
KEGG: dps:DPPB61 hypothetical protein.
 
     0.753
Mmc1_1354
KEGG: ecs:ECs5262 hypothetical protein.
  
     0.670
Mmc1_1578
KEGG: dps:DPPB62 hypothetical protein.
  
     0.664
Mmc1_1353
PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: ecs:ECs5263 putative RNA helicase.
  
     0.617
Mmc1_1355
PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases-like; KEGG: ece:Z5899 putative ATP-dependent helicase.
 
     0.557
Mmc1_1352
PFAM: UvrD/REP helicase; KEGG: ecs:ECs5264 putative DNA helicase.
  
     0.534
Mmc1_1057
PFAM: Radical SAM domain protein; KEGG: mag:amb0070 predicted Fe-S oxidoreductase.
  
     0.514
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.