STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_0134Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification. (1015 aa)    
Predicted Functional Partners:
Mmc1_0129
TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: noc:Noc_0439 type I restriction-modification system M subunit.
 
 0.998
Mmc1_0132
PFAM: restriction modification system DNA specificity domain; KEGG: sab:SAB0265 type-I specificity determinant subunit.
 
  
 0.988
Mmc1_2017
KEGG: nar:Saro_0354 putative type II DNA modification enzyme.
  
 
 0.937
Mmc1_0130
Anticodon nuclease.
 
     0.900
Mmc1_0131
KEGG: eba:ebA2608 DNA-binding protein.
 
    0.861
Mmc1_2709
PFAM: sigma-54 factor, interaction domain-containing protein; Helix-turn-helix, type 11 domain protein; SMART: AAA ATPase; KEGG: xoo:XOO4202 two-component system regulatory protein.
  
  
 0.780
Mmc1_0133
KEGG: cch:Cag_1524 DNA-damage-inducible protein D.
       0.756
Mmc1_2021
KEGG: xft:PD2085 hypothetical protein.
  
    0.665
Mmc1_0110
PFAM: permease; KEGG: tbd:Tbd_1427 putative permease.
   
    0.412
Mmc1_1797
PFAM: permease; KEGG: dvu:DVU3386 permease, putative.
   
    0.412
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.