STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_0244PFAM: CutA1 divalent ion tolerance protein; KEGG: noc:Noc_1056 CutA1 divalent ion tolerance protein. (117 aa)    
Predicted Functional Partners:
Mmc1_0245
PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: rpa:RPA4472 putative c-type cytochrome biogenesis protein.
       0.773
Mmc1_0243
PFAM: Redoxin domain protein; KEGG: aba:Acid345_3927 thioredoxin-like.
     
 0.703
Mmc1_2950
PFAM: Desulfoferrodoxin, ferrous iron-binding region; KEGG: tdn:Tmden_0990 hypothetical protein.
   
    0.517
Mmc1_0242
TIGRFAM: UbiD family decarboxylases; PFAM: Carboxylyase-related protein; KEGG: vpa:VP2997 3-polyprenyl-4-hydroxybenzoate decarboxylase; Belongs to the UbiD family.
       0.479
Mmc1_1003
Heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: sat:SYN_01290 copper-exporting ATPase.
   
  
 0.416
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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