STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_0312Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO4487 DNA-binding response regulator. (221 aa)    
Predicted Functional Partners:
Mmc1_0311
PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: pfl:PFL_4014 sensor histidine kinase.
 
 0.974
Mmc1_3242
PAS/PAC sensor hybrid histidine kinase; KEGG: hch:HCH_00794 FOG: PAS/PAC domain; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
 
 0.894
Mmc1_3186
Periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: noc:Noc_0675 signal transduction histidine kinase.
 
 0.833
Mmc1_0313
Membrane protein; KEGG: mag:amb0190 predicted membrane protein.
 
  
 0.822
Mmc1_1899
Periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: mfa:Mfla_2395 periplasmic sensor signal transduction histidine kinase.
 
 
 0.812
Mmc1_2297
Putative PAS/PAC sensor protein; PFAM: response regulator receiver; SMART: PAS domain containing protein; KEGG: ana:all5309 two-component hybrid sensor and regulator.
 
 
 0.811
Mmc1_0314
Hypothetical protein; KEGG: son:SO4485 diheme cytochrome c.
       0.773
Mmc1_2304
PFAM: response regulator receiver; KEGG: dar:Daro_0007 response regulator receiver:metal-dependent phosphohydrolase, HD subdomain.
  
     0.761
Mmc1_1484
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: mag:amb3006 response regulator containing a CheY-like receiver domain and a GGDEF domain.
 
  
 0.758
Mmc1_3381
Periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: eba:ebA4466 predicted histidine kinase-like ATPase.
 
 0.758
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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