STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_0409KEGG: reu:Reut_B4998 hypothetical protein. (295 aa)    
Predicted Functional Partners:
Mmc1_0731
PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: mag:amb2377 ABC-type bacteriocin/lantibiotic exporters.
  
     0.641
Mmc1_0732
PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: mag:amb2376 ABC-type protease/lipase transport system, ATPase and permease components.
  
     0.615
Mmc1_0730
TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: mag:amb2378 membrane-fusion protein.
  
     0.531
Mmc1_0548
PFAM: ABC transporter related; peptidase C39, bacteriocin processing; SMART: AAA ATPase; KEGG: reu:Reut_C5973 ABC transporter, transmembrane region:ABC transporter related.
  
     0.523
Mmc1_3326
KEGG: noc:Noc_1958 hypothetical protein.
  
 
   0.515
Mmc1_0547
TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: eca:ECA3269 HlyD family secretion protein.
  
     0.455
Mmc1_3297
PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; KEGG: mag:amb4504 predicted periplasmic or secreted lipoprotein.
  
     0.448
Mmc1_2402
PFAM: glycosyl transferase, group 1; KEGG: mca:MCA1168 colanic acid biosynthesis glycosyl transferase, putative.
  
 
   0.442
Mmc1_2428
KEGG: noc:Noc_1958 hypothetical protein.
  
 
   0.441
Mmc1_2986
TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: mag:amb3159 membrane-fusion protein.
  
     0.425
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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