STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_0423Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: mag:amb1137 AraC-type DNA-binding domain-containing protein. (331 aa)    
Predicted Functional Partners:
Mmc1_0421
PFAM: Cadherin; SMART: Dystroglycan-type cadherin domain protein; KEGG: mag:amb3277 RTX toxins and related Ca2+-binding protein.
 
  
 0.660
Mmc1_0422
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: mag:amb1138 AraC-type DNA-binding domain-containing protein.
 
    
0.638
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.629
Mmc1_2381
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bbr:BB2938 probable LysR-family transcriptional regulator.
  
  
 0.520
Mmc1_2112
Cache sensor hybrid histidine kinase; PFAM: response regulator receiver; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: cvi:CV1579 probable two-component hybrid sensor and regulator.
 
  
 0.518
Mmc1_2958
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: eba:ebA2966 transcriptional regulator, LysR family.
  
  
 0.503
Mmc1_0831
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; bacteriophage CI repressor; Cupin 2, conserved barrel domain protein; KEGG: cps:CPS_3286 DNA-binding protein.
 
 
 0.490
Mmc1_3087
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO2202 transcriptional regulator, LysR family.
  
  
 0.488
Mmc1_0419
KEGG: mag:amb3274 membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
     
 0.480
Mmc1_0420
PFAM: outer membrane efflux protein; KEGG: mag:amb3276 outer membrane protein.
     
 0.475
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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