node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Mmc1_0172 | Mmc1_0479 | Mmc1_0172 | Mmc1_0479 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | PFAM: protein of unknown function DUF28; KEGG: gme:Gmet_0743 hypothetical protein. | 0.579 |
Mmc1_0172 | metG | Mmc1_0172 | Mmc1_1856 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.609 |
Mmc1_0172 | rplS | Mmc1_0172 | Mmc1_0507 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.982 |
Mmc1_0172 | rpmF | Mmc1_0172 | Mmc1_1643 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: dra:DR2366 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.856 |
Mmc1_0172 | tig | Mmc1_0172 | Mmc1_3643 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily. | 0.908 |
Mmc1_0172 | tsf | Mmc1_0172 | Mmc1_1841 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | Translation elongation factor Ts (EF-Ts); Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. | 0.939 |
Mmc1_0479 | Mmc1_0172 | Mmc1_0479 | Mmc1_0172 | PFAM: protein of unknown function DUF28; KEGG: gme:Gmet_0743 hypothetical protein. | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.579 |
Mmc1_0479 | aspS | Mmc1_0479 | Mmc1_0942 | PFAM: protein of unknown function DUF28; KEGG: gme:Gmet_0743 hypothetical protein. | aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | 0.859 |
Mmc1_0479 | metG | Mmc1_0479 | Mmc1_1856 | PFAM: protein of unknown function DUF28; KEGG: gme:Gmet_0743 hypothetical protein. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.696 |
Mmc1_0479 | rplS | Mmc1_0479 | Mmc1_0507 | PFAM: protein of unknown function DUF28; KEGG: gme:Gmet_0743 hypothetical protein. | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.684 |
Mmc1_0479 | rpmF | Mmc1_0479 | Mmc1_1643 | PFAM: protein of unknown function DUF28; KEGG: gme:Gmet_0743 hypothetical protein. | TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: dra:DR2366 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.567 |
Mmc1_0479 | ruvA | Mmc1_0479 | Mmc1_0477 | PFAM: protein of unknown function DUF28; KEGG: gme:Gmet_0743 hypothetical protein. | Holliday junction DNA helicase subunit RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.930 |
Mmc1_0479 | ruvC | Mmc1_0479 | Mmc1_0478 | PFAM: protein of unknown function DUF28; KEGG: gme:Gmet_0743 hypothetical protein. | Holliday junction endonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.856 |
Mmc1_0479 | tig | Mmc1_0479 | Mmc1_3643 | PFAM: protein of unknown function DUF28; KEGG: gme:Gmet_0743 hypothetical protein. | Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily. | 0.574 |
Mmc1_0479 | tsf | Mmc1_0479 | Mmc1_1841 | PFAM: protein of unknown function DUF28; KEGG: gme:Gmet_0743 hypothetical protein. | Translation elongation factor Ts (EF-Ts); Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. | 0.567 |
Mmc1_0479 | ychF | Mmc1_0479 | Mmc1_0823 | PFAM: protein of unknown function DUF28; KEGG: gme:Gmet_0743 hypothetical protein. | GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. | 0.596 |
aspS | Mmc1_0479 | Mmc1_0942 | Mmc1_0479 | aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | PFAM: protein of unknown function DUF28; KEGG: gme:Gmet_0743 hypothetical protein. | 0.859 |
aspS | metG | Mmc1_0942 | Mmc1_1856 | aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.811 |
aspS | rpmF | Mmc1_0942 | Mmc1_1643 | aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: dra:DR2366 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.588 |
aspS | ruvA | Mmc1_0942 | Mmc1_0477 | aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | Holliday junction DNA helicase subunit RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.684 |