STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_0540KEGG: cps:CPS_1652 conserved hypothetical protein. (764 aa)    
Predicted Functional Partners:
Mmc1_0539
KEGG: cps:CPS_1653 hypothetical protein.
  
 0.970
Mmc1_0538
KEGG: cps:CPS_1654 hypothetical protein.
 
     0.950
Mmc1_0541
PFAM: regulatory protein, TetR; KEGG: tbd:Tbd_0482 possible transcriptional regulator, TetR family.
       0.662
Mmc1_0542
Periplasmic sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: cvi:CV3248 hypothetical protein.
       0.440
Mmc1_2357
KEGG: eba:ebB186 hypothetical protein.
  
     0.415
Mmc1_0594
Hpr(Ser) kinase/phosphatase; KEGG: tbd:Tbd_2497 HPr kinase.
  
     0.413
Mmc1_2358
PFAM: TrkA-N domain protein; Ion transport 2 domain protein,; KEGG: mfa:Mfla_2071 TrkA-N.
  
     0.404
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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