STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_0563PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: mag:amb0078 predicted pyridoxal phosphate-dependent enzyme; Belongs to the DegT/DnrJ/EryC1 family. (381 aa)    
Predicted Functional Partners:
Mmc1_2310
KEGG: nme:NMB1820 pilin glycosylation protein PglB.
   0.925
fcl
NAD-dependent epimerase/dehydratase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.
  
 
 0.913
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
  
 
 0.910
Mmc1_2435
PFAM: NAD-dependent epimerase/dehydratase; KEGG: syn:slr1072 GDP-D-mannose dehydratase.
  
 
 0.910
Mmc1_0583
PFAM: sugar transferase; KEGG: tbd:Tbd_0199 putative glycosyltransferase.
 
  
 0.900
Mmc1_0561
PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: ilo:IL0550 UDP-N-acetylglucosamine 2-epimerase.
 
  
 0.894
Mmc1_0562
PFAM: N-acetylneuraminic acid synthase, N-terminal domain; SAF domain; KEGG: syw:SYNW0448 putative N-acetylneuraminic acid synthetase.
 
  
 0.888
Mmc1_0560
Nucleotidyl transferase; PFAM: CBS domain containing protein; Nucleotidyl transferase; KEGG: sru:SRU_0607 putative mannose-1-phosphate guanyltransferase.
 
 
 0.858
Mmc1_2409
Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: mag:amb0716 predicted nucleoside-diphosphate sugar epimerase.
 
  
 0.736
Mmc1_1494
PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: aba:Acid345_1079 oxidoreductase.
  
 0.688
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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