STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_0589KEGG: nmu:Nmul_A2523 hypothetical protein. (347 aa)    
Predicted Functional Partners:
Mmc1_0588
PFAM: polysaccharide deacetylase; KEGG: tbd:Tbd_0287 polysaccharide deacetylase.
 
   
 0.954
Mmc1_0590
PFAM: glycosyl transferase, group 1; KEGG: tbd:Tbd_0289 glycosyl transferase group 1.
 
     0.951
Mmc1_0591
PFAM: glycosyl transferase, group 1; KEGG: dar:Daro_2407 glycosyl transferase, group 1.
 
     0.945
Mmc1_0586
KEGG: eba:ebA4250 probable exopolysaccharide biosynthesis protein.
 
     0.896
Mmc1_0585
PFAM: lipopolysaccharide biosynthesis; KEGG: neu:NE1804 chain length determinant protein.
 
     0.874
Mmc1_0595
KEGG: tbd:Tbd_2498 hypothetical protein.
 
     0.865
Mmc1_0594
Hpr(Ser) kinase/phosphatase; KEGG: tbd:Tbd_2497 HPr kinase.
 
    0.861
Mmc1_0583
PFAM: sugar transferase; KEGG: tbd:Tbd_0199 putative glycosyltransferase.
 
     0.836
Mmc1_0582
PFAM: O-antigen polymerase; KEGG: tbd:Tbd_0297 hypothetical protein.
 
     0.825
Mmc1_0587
PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: dar:Daro_2402 UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
 
     0.822
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.