STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_0617PFAM: GHMP kinase; GHMP kinase, C terminal domain protein; KEGG: mag:amb1073 predicted kinase. (333 aa)    
Predicted Functional Partners:
Mmc1_1555
D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase; TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bur:Bcep18194_A6030 hypothetical protein.
 
 0.990
gmhA
Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.
 
 
 0.985
Mmc1_2299
KEGG: rpa:RPA3927 possible phosphoheptose isomerase.
 
 
 0.984
Mmc1_0618
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: mag:amb0797 nucleoside-diphosphate-sugar epimerase.
 
  
 0.957
Mmc1_0612
PFAM: Nucleotidyl transferase; KEGG: mag:amb0798 nucleoside-diphosphate-sugar pyrophosphorylase.
  
 0.921
Mmc1_0616
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mag:amb0793 predicted pyridoxal phosphate-dependent enzyme; Belongs to the DegT/DnrJ/EryC1 family.
 
     0.825
Mmc1_0614
PFAM: Transketolase, central region; Transketolase domain protein; KEGG: mag:amb0067 putative transketolase C-terminal section.
       0.721
Mmc1_0615
PFAM: Transketolase domain protein; KEGG: mag:amb0066 putative transketolase N-terminal section.
       0.721
Mmc1_2166
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; KEGG: lic:LIC12199 UDP-glucose 4-epimerase.
 
  
 0.707
Mmc1_0333
PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: rru:Rru_A2116 UDP-glucose 6-dehydrogenase.
  
  
 0.575
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.