STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_0619Amino acid ABC transporter substrate-binding protein, PAAT family; KEGG: pfo:Pfl_0328 hypothetical protein; TC 3.A.1.3.-. (248 aa)    
Predicted Functional Partners:
Mmc1_3580
PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: hch:HCH_05185 response regulator containing a CheY-like receiver domain and a GGDEF domain.
  
     0.536
Mmc1_2342
PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: hch:HCH_05185 response regulator containing a CheY-like receiver domain and a GGDEF domain.
  
     0.517
Mmc1_3579
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: pae:PA3347 hypothetical protein.
  
     0.506
Mmc1_0621
PFAM: glycosyl transferase, family 2; KEGG: pca:Pcar_1927 glycosyl transferase, group 2 family protein.
     
 0.496
Mmc1_0620
Hypothetical protein.
  
    0.495
Mmc1_2956
PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: pae:PA3346 probable two-component response regulator.
  
     0.479
Mmc1_2957
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: pae:PA3347 hypothetical protein.
  
     0.478
Mmc1_2962
Periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: mag:amb1111 signal transduction histidine kinase.
  
   
 0.446
Mmc1_1805
PFAM: response regulator receiver; CheW domain protein; KEGG: ilo:IL1149 chemotaxis protein CheV.
  
 
   0.431
Mmc1_0706
PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: noc:Noc_1604 glutamate synthase (ferredoxin).
  
  
 0.427
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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