STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_0708Hypothetical protein; KEGG: ana:all3838 similar to kinesin light chain. (297 aa)    
Predicted Functional Partners:
Mmc1_3695
PFAM: TPR repeat-containing protein; Sel1 domain protein repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mag:amb2236 TPR repeat.
 
 
 0.821
Mmc1_0494
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mba:Mbar_A3708 hypothetical protein.
 
     0.775
Mmc1_0709
DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: lic:LIC12187 perosamine synthetase; Belongs to the DegT/DnrJ/EryC1 family.
       0.773
Mmc1_0971
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gvi:gll2226 hypothetical protein.
  
     0.753
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.663
Mmc1_3477
PFAM: WD-40 repeat protein; peptidase C14, caspase catalytic subunit p20; KEGG: bbr:BB4985 hypothetical protein.
 
 0.660
htpG
Heat shock protein Hsp90; Molecular chaperone. Has ATPase activity.
   
 0.659
Mmc1_0288
PFAM: WD-40 repeat protein; protein of unknown function DUF323; KEGG: dps:DP2422 hypothetical protein.
 
 0.611
Mmc1_1634
Ankyrin repeat-like protein; KEGG: afm:Afu1g01020 hypothetical protein.
  
 0.594
Mmc1_1803
PFAM: cyclic nucleotide-binding; KEGG: aor:AO090003000534 cAMP-dependent protein kinase types I and II, regulatory subunit.
  
 
 
 0.568
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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