STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_0710PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mbu:Mbur_1602 Fe-S protein, radical SAM family. (516 aa)    
Predicted Functional Partners:
Mmc1_1119
PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mka:MK0895 Fe-S oxidoreductase.
  
  
 
0.929
Mmc1_1463
PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mka:MK0895 Fe-S oxidoreductase.
  
  
 
0.929
Mmc1_0549
PFAM: Heme NO binding domain protein; KEGG: ccr:CC2992 hypothetical protein.
  
  
 0.651
Mmc1_0146
PFAM: protein of unknown function DUF344; KEGG: ana:alr2191 hypothetical protein.
   
    0.589
Mmc1_3368
PFAM: protein of unknown function DUF344; KEGG: tdn:Tmden_1884 protein of unknown function DUF344.
   
    0.589
Mmc1_0026
KEGG: tcx:Tcr_0501 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
  
 0.565
Mmc1_1457
KEGG: bxe:Bxe_B2645 hypothetical protein.
   
    0.515
Mmc1_2384
Transcriptional regulator, TraR/DksA family; KEGG: eli:ELI_12150 DnaK suppressor protein, putative.
   
    0.515
Mmc1_2352
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mlo:mll6626 nitrogen fixation protein FixG.
   
    0.512
Mmc1_1348
PFAM: heat shock protein Hsp20; KEGG: gme:Gmet_2986 heat shock protein HSP20; Belongs to the small heat shock protein (HSP20) family.
   
    0.418
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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