STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_0885Hypothetical protein. (167 aa)    
Predicted Functional Partners:
Mmc1_0883
PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; KEGG: tko:TK2070 cytosolic NiFe-hydrogenase, delta subunit.
  
  
 0.836
Mmc1_0884
PFAM: nickel-dependent hydrogenase, large subunit; KEGG: pho:PH1294 cytochrome-c3 hydrogenase alpha chain.
  
  
 0.828
Mmc1_0881
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pho:PH1290 cytochrome-c3 hydrogenase alpha chain.
     
 0.798
Mmc1_0882
PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pab:PAB0639 cytochrome-c3 hydrogenase subunit gamma.
  
    0.786
Mmc1_2493
PFAM: nickel-dependent hydrogenase, large subunit; KEGG: dar:Daro_3960 nickel-dependent hydrogenase, large subunit.
  
 
 0.466
Mmc1_2497
KEGG: mag:amb1644 Ni,Fe-hydrogenase I large subunit.
  
 
 0.466
Mmc1_2503
PFAM: nickel-dependent hydrogenase, large subunit; KEGG: mag:amb1647 Ni,Fe-hydrogenase I large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
  
 
 0.466
Mmc1_0880
PFAM: hydrogenase formation HypD protein; KEGG: nmu:Nmul_A1667 hydrogenase formation HypD protein; Belongs to the HypD family.
     
 0.462
Mmc1_0297
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: tcx:Tcr_1381 sulfide-quinone reductase.
    
 
 0.410
Mmc1_2448
Sulfide-quinone oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: tbd:Tbd_2225 sulfide-quinone reductase.
    
 
 0.410
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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