STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_0893PFAM: Radical SAM domain protein; KEGG: mca:MCA0073 pyruvate formate lyase-activating enzyme, putative. (361 aa)    
Predicted Functional Partners:
Mmc1_2152
PFAM: AMMECR1 domain protein; protein of unknown function DUF52; KEGG: tbd:Tbd_1586 hypothetical protein; Belongs to the MEMO1 family.
     0.946
Mmc1_3270
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: eba:ebA6036 putative rubredoxin reductase.
  
  
 0.566
Mmc1_0808
PFAM: Carboxymuconolactone decarboxylase; Rieske [2Fe-2S] domain protein; KEGG: ret:RHE_CH01781 nitrite reductase [NAD(P)H], small subunit protein.
   
  
 0.543
Mmc1_0892
Hypothetical protein.
       0.526
Mmc1_1741
PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: pmt:PMT0541 putative oxidoreductase, Fe-S subunit.
 
   
 0.518
Mmc1_1432
Pyruvate kinase; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; pyruvate kinase; HpcH/HpaI aldolase; KEGG: ade:Adeh_4234 pyruvate kinase; Belongs to the pyruvate kinase family.
     
 0.507
fur
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: eba:ebB167 ferric uptake regulation protein (ferric uptake regulator); Belongs to the Fur family.
       0.468
Mmc1_0829
PFAM: aldehyde dehydrogenase; KEGG: nar:Saro_2378 aldehyde dehydrogenase.
  
  
 0.455
Mmc1_0891
PFAM: AMP-dependent synthetase and ligase; KEGG: noc:Noc_2380 AMP-dependent synthetase and ligase.
  
    0.451
Mmc1_1749
PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: btk:BT9727_3515 pyruvate ferredoxin oxidoreductase, alpha subunit.
     
 0.450
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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