STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_0920PFAM: Sel1 domain protein repeat-containing protein; KEGG: cch:Cag_1938 Sel1-like repeat. (159 aa)    
Predicted Functional Partners:
Mmc1_3359
PFAM: protein kinase; Sel1 domain protein repeat-containing protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: tbd:Tbd_0475 serine/threonine protein kinase.
 
     0.741
Mmc1_1291
PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: tbd:Tbd_1692 putative ATPase.
 
 
 0.471
Mmc1_2252
PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: ddi:DDB0216612 hypothetical protein.
  
 
   0.467
Mmc1_0921
PFAM: Carbamoyltransferase; KEGG: mca:MCA1163 nodulation protein nolNO, putative.
       0.453
Mmc1_0922
PFAM: glycosyl transferase, family 4; KEGG: mca:MCA1133 undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase, putative.
       0.453
Mmc1_1077
PFAM: AAA ATPase, central domain protein; KEGG: mca:MCA0262 ATPase, AAA family.
   
 0.403
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.