STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_0931PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: bbr:BB0781 putative type II secretion system protein. (551 aa)    
Predicted Functional Partners:
Mmc1_0932
PFAM: type II secretion system protein; KEGG: bbr:BB0780 putative type II secretion system protein.
 
 0.997
Mmc1_0928
TIGRFAM: pilus (MSHA type) biogenesis protein MshL; PFAM: type II and III secretion system protein; KEGG: bbr:BB0784 putative type II secretion system protein; Belongs to the bacterial secretin family.
 
  
 0.936
Mmc1_0021
Type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.919
Mmc1_3531
TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: neu:NE1611 bacterial general secretion pathway protein G.
 
 
 0.917
Mmc1_0933
KEGG: bbr:BB0790 putative type II secretion system protein.
 
 
 0.829
Mmc1_3596
KEGG: tcx:Tcr_0469 hypothetical protein.
 
 
 0.826
Mmc1_0930
PFAM: Peptidoglycan-binding domain 1 protein; Sporulation domain protein; SMART: AAA ATPase; KEGG: bbr:BB0782 putative type II secretion system protein.
     
 0.808
Mmc1_1109
PFAM: type II and III secretion system protein; KEGG: psp:PSPPH_3054 general secretion pathway protein GspD; Belongs to the bacterial secretin family.
 
  
 0.805
Mmc1_0929
Hypothetical protein.
       0.773
Mmc1_0600
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: ComEC/Rec2-related protein; KEGG: noc:Noc_2672 DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.729
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.