STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_0962PFAM: aminoglycoside phosphotransferase; KEGG: mca:MCA0600 hypothetical protein. (340 aa)    
Predicted Functional Partners:
Mmc1_0963
PFAM: Nucleotidyl transferase; KEGG: pfl:PFL_5644 nucleotidyltransferase family protein.
 
 0.999
Mmc1_1631
Beta-N-acetylhexosaminidase; PFAM: glycoside hydrolase, family 3 domain protein; KEGG: rpa:RPA2852 putative sugar hydrolase.
 
  
 0.946
Mmc1_0961
PFAM: protein of unknown function UPF0079; KEGG: yps:YPTB0421 hypothetical protein.
      0.942
glmU
UDP-N-acetylglucosamine pyrophosphorylase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain.
    
 0.917
Mmc1_0960
PFAM: CBS domain containing protein; KEGG: pca:Pcar_1004 CBS domain containing membrane protein.
       0.746
Mmc1_0958
KEGG: dar:Daro_0836 hypothetical protein.
       0.542
Mmc1_0959
Hypothetical protein.
       0.542
Mmc1_2937
PFAM: major facilitator superfamily MFS_1; KEGG: mag:amb4488 permease of the major facilitator superfamily.
  
   
 0.500
mpl
UDP-N-acetylmuramate; Reutilizes the intact tripeptide L-alanyl-gamma-D-glutamyl- meso-diaminopimelate by linking it to UDP-N-acetylmuramate. Belongs to the MurCDEF family. Mpl subfamily.
  
  
 0.474
Mmc1_0964
PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: atc:AGR_C_3159 probable protein-L-isoaspartate(D-aspartate) O-methyltransferase.
       0.460
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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