STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_1001KEGG: noc:Noc_1326 sterol desaturase-related protein. (282 aa)    
Predicted Functional Partners:
Mmc1_1002
PFAM: heat shock protein DnaJ domain protein; KEGG: mhu:Mhun_0257 heat shock protein DnaJ-like.
     
 0.775
Mmc1_0578
KEGG: cps:CPS_5006 hypothetical protein.
   
 
 0.677
Mmc1_2170
PFAM: NUDIX hydrolase.
  
  
 0.578
Mmc1_1890
PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: sde:Sde_2920 fibro-slime.
   
  
 0.548
Mmc1_0939
KEGG: lpn:lpg0596 hypothetical protein.
 
    0.532
Mmc1_0305
PFAM: Squalene/phytoene synthase; KEGG: aba:Acid345_1745 squalene/phytoene synthase.
  
 
 0.515
Mmc1_0306
PFAM: Squalene/phytoene synthase; KEGG: dar:Daro_2706 squalene/phytoene synthase.
  
 
 0.515
Mmc1_0403
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: tdn:Tmden_0909 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains).
   
    0.512
Mmc1_0408
KEGG: noc:Noc_2021 PAS sensor diguanylate cyclase/phophodiesterase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
   
    0.512
Mmc1_0887
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: ppu:PP0672 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
   
    0.512
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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